B2B migration to Shopify Plus: wholesale, buying prices and customer portal

  • Published April 21, 2026
  • Written by Michelle Brouwers
  • Reading time 6 minutes

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B2B wholesale migration to Shopify Plus – pop art header

You're running a B2B or wholesale store on WooCommerce, Magento or Lightspeed. It works — more or less. Separate plugins for customer groups, manually maintained price lists, purchase prices that are never quite right. Every time you onboard a new business customer, it's a logistical circus.

Shopify Plus offers a fully native B2B platform that turns this circus into one streamlined, professional sales channel. And Syncer.nl ensures your B2B data — customer groups, price lists, order history — comes along flawlessly. No manual work, no losses. In this article we explain what Shopify Plus B2B is, which features you get, and how the migration works.

1. Why B2B on legacy platforms is so frustrating

WooCommerce, Magento and Lightspeed were built for B2C — and you can tell. B2B functionality is bolted on via plugins, custom work or separate systems. The result: technical debt, slow pages and maintenance that never ends.

Familiar problems:

  • WooCommerce: B2B pricing via plugins like WooCommerce Wholesale Prices or B2BWoo — they conflict with updates, expire and demand constant attention
  • Magento: Powerful, but enormously complex. A separate B2B module, custom customer portals, and maintenance by a developer at every turn
  • Lightspeed: Good for retail, limited for wholesale — customer-specific prices are clunky and the portal for business customers is rudimentary

The question isn't whether you should migrate, but when — and how you do it without chaos.

2. Shopify Plus native B2B: everything built in

Shopify Plus contains a fully native B2B environment that runs alongside your B2C store. No external plugins, no custom work: everything is in the platform by default. Business customers get their own portal, their own login and their own buying experience.

Shopify Plus B2B dashboard with price lists and company accounts

The core B2B features of Shopify Plus:

Feature What it does
Company accounts Multiple employees per company, each with their own roles and purchase rights
Catalogs & price lists Unlimited number of catalogs, assigned per company or location with their own purchase prices
Net prices Show prices excluding VAT to business customers, including reverse-charge EU VAT functionality
Minimum order values Set minimum order amounts and minimum quantities per product per customer group
Volume pricing Volume discounts on larger orders, calculated automatically at checkout
Payment terms Order on account, net 30/60 days — configurable per customer
Quick reorder Customers easily reorder previous orders via their portal

3. Customer-specific purchase prices and price lists

This is the heart of every B2B operation: your customer A pays €18.50 per unit, customer B pays €21.00, and customer C has a special dealer price. On legacy platforms this is an admin nightmare.

On Shopify Plus you set up catalogs: product sets with their own prices per company or location. You can use fixed prices or percentage discounts on the standard retail price. Multiple catalogs are possible per customer — handy when a wholesaler buys both A- and B-grade items at different margins.

Shopify always shows the lowest price when multiple catalogs apply. That way the customer automatically benefits from the best deal without manual intervention from you. According to the Shopify Help Center documentation, the number of catalogs on Shopify Plus is unlimited — on lower plans this is capped at 3.

4. Company accounts: multiple users, one account

A purchasing manager at a retail chain isn't the only one ordering. There are assistants, branch managers, regional buyers. On Shopify Plus you set up multiple users per company account, each with their own permissions:

  • Buyer: can place orders up to a limit
  • Manager: sees all orders for the account, approves them
  • Viewer: views catalogs and orders, doesn't order themselves

This makes Shopify Plus suitable for enterprise B2B customers with decentralised purchasing structures — think franchise networks, building materials wholesalers or medical suppliers.

5. Migrating from WooCommerce, Magento or Lightspeed: the data challenge

B2B wholesale warehouse with pallets and bulk orders

The technical migration to Shopify Plus isn't the problem — the data is the problem. Think about:

  • Hundreds of customer groups with their own pricing agreements
  • Thousands of B2B customers with linked company numbers and VAT IDs
  • Price lists per item, per customer, per period
  • Order history of business customers (for reorders)
  • Outstanding balances, payment arrangements

Moving this manually takes months. Error-prone, expensive and demotivating for your team.

Syncer.nl Live Sync®: B2B data via API, no manual work

Syncer.nl uses Live Sync®, a proprietary synchronisation technology that brings your full B2B data over to Shopify Plus via API. Automated, validated and verifiable.

What Live Sync® does for B2B migrations:

  • Customer groups → Shopify Plus Company accounts with the correct price rules
  • Price lists → Shopify catalogs with per-product purchase prices or discount percentages
  • Order history → Complete migration path so business customers see their old orders in the portal
  • VAT settings → VAT numbers, reverse-charge VAT per EU country, net price display
  • Payment arrangements → Customer-level payment terms (net 30, net 60) directly in Shopify Plus

The result: no downtime for your B2B customers during the migration. They don't notice the technology switch — but they do notice that the platform is suddenly faster, clearer and nicer to use.

6. Migration from the three biggest legacy platforms

Platform B2B data challenge Live Sync® solution
WooCommerce Price lists in B2BWoo or Wholesale Prices plugin — not exportable by default Live Sync® reads plugin tables directly via the WooCommerce API
Magento Complex customer groups, tier pricing, custom catalogs in the database Full extraction via Magento REST API + custom mapping to Shopify Plus catalogs
Lightspeed Customer-specific discounts in Lightspeed are hard to translate 1:1 Live Sync® maps Lightspeed customer groups to Shopify Plus Company accounts with catalogs

7. Here's what your B2B store on Shopify Plus looks like for your customers

After the migration, your business customers get an experience they immediately recognise as professional:

  1. They log in to a secure B2B portal within your Shopify store
  2. They see their own personalised product catalog with their purchase prices
  3. They can quick-order via repeat orders or buying lists
  4. They pay on their own payment terms (net 30 or via iDEAL/bank transfer)
  5. They manage their own account with multiple employees and orders

That's the B2B experience business buyers in 2025 expect. Not a separate spreadsheet or a form on your contact page — but a modern, self-service buying environment.

Ready for your B2B migration?

Whether you have 200 or 2,000 wholesale customers: Syncer.nl brings your B2B data over to Shopify Plus completely and without errors. Customer groups, price lists, order history — all via Live Sync®, no manual work.

Want to know how much work your specific B2B migration involves? Schedule a free migration scan and find out in a single conversation.

📋 Request a free B2B migration scan →


Sources

Michelle Brouwers

About Michelle

Shopify backend- and frontend developer. Loves AI and builds apps. Blogs about migrations and tech.

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